Publications
1.-
Morales P
, Gajardo F
, Valdivieso C
, Valladares MA
, Di Genova A
, Orellana A
, Gutiérrez RA
, González M
, Montecino M
, Maass A
, Méndez MA
, Allende ML
(2024). Genomes of the Orestias pupfish from the Andean Altiplano shed light on their
evolutionary history and phylogenetic relationships within Cyprinodontiformes.
BMC Genomics
25
, 614
.
PubMed
2.-
Dussarrat T
, Nilo-Poyanco R
, Moyano TC
, Prigent S
, Jeffers TL
, Díaz FP
, Decros G
, Audi L
, Sondervan VM
, Shen B
, Araus V
, Rolin D
, Shasha D
, Coruzzi GM
, Gibon Y
, Latorre C
, Pétriacq P
, Gutiérrez RA
(2024). Phylogenetically diverse wild plant species use common biochemical strategies to
thrive in the Atacama Desert.
J Exp Bot
75
, 3596-3611
.
PubMed
3.-
Shanks CM
, Rothkegel K
, Brooks MD
, Cheng CY
, Alvarez JM
, Ruffel S
, Krouk G
, Gutiérrez RA
, Coruzzi GM
(2024). Nitrogen sensing and regulatory networks: it's about time and space.
Plant Cell
36
, 1482-1503
.
PubMed
4.-
Cerda A
, Rivera M
, Armijo G
, Ibarra-Henriquez C
, Reyes J
, Blázquez-Sánchez P
, Avilés J
, Arce A
, Seguel A
, Brown AJ
, Vásquez Y
, Cortez-San Martín M
, Cubillos FA
, García P
, Ferres M
, Ramírez-Sarmiento CA
, Federici F
, Gutiérrez RA
(2024). An Open One-Step RT-qPCR for SARS-CoV-2 detection.
PLoS One
19
, e0297081
.
PubMed
5.-
Araya M
, Villarreal P
, Moyano T
, Santos ARO
, Díaz FP
, Bustos-Jarufe A
, Urbina K
, Del Pino JE
, Groenewald M
, Gutiérrez RA
, Rosa CA
, Cubillos FA
(2024). Nakazawaea atacamensis f.a., sp. nov. a novel nonconventional fermentative
ascomycetous yeast species from the Atacama Desert.
Yeast
41
, 52-63
.
PubMed
6.-
Díaz FP
, Dussarrat T
, Carrasco-Puga G
, Colombié S
, Prigent S
, Decros G
, Bernillon S
, Cassan C
, Flandin A
, Guerrero PC
, Gibon Y
, Rolin D
, Cavieres LA
, Pétriacq P
, Latorre C
, Gutiérrez RA
(2024). Ecological and metabolic implications of the nurse effect of Maihueniopsis
camachoi in the Atacama Desert.
New Phytol
241
, 1074-1087
.
PubMed
7.-
Pereyra ME
, Costigliolo Rojas C
, Jarrell AF
, Hovland AS
, Snipes SA
, Nagpal P
, Alabadí D
, Blázquez MA
, Gutiérrez RA
, Reed JW
, Gray WM
, Casal JJ
(2023). PIF4 enhances the expression of SAUR genes to promote growth in response to
nitrate.
Proc Natl Acad Sci U S A
120
, e2304513120
.
PubMed
8.-
Chaput V
, Li J
, Séré D
, Tillard P
, Fizames C
, Moyano T
, Zuo K
, Martin A
, Gutiérrez RA
, Gojon A
, Lejay L
(2023). Characterization of the signalling pathways involved in the repression of root
nitrate uptake by nitrate in Arabidopsis thaliana.
J Exp Bot
74
, 4244-4258
.
PubMed
9.-
Mandakovic D
, Aguado-Norese C
, García-Jiménez B
, Hodar C
, Maldonado JE
, Gaete A
, Latorre M
, Wilkinson MD
, Gutiérrez RA
, Cavieres LA
, Medina J
, Cambiazo V
, Gonzalez M
(2023). Testing the stress gradient hypothesis in soil bacterial communities associated
with vegetation belts in the Andean Atacama Desert.
Environ Microbiome
18
, 24
.
PubMed
10.-
Kobayashi S
, Maldonado JE
, Gaete A
, Araya I
, Aguado-Norese C
, Cumplido N
, Díaz S
, Espinoza A
, Fernández E
, Gajardo F
, González-Ordenes F
, Hauyon K
, Maldonado P
, Maldonado R
, Pochet I
, Riveros A
, Sandoval P
, Sepúlveda-González A
, Stuardo C
, Tapia-Reyes P
, Thornton C
, Undurraga S
, Varas M
, Valdivieso C
, Gutiérrez RA
, Orellana A
, Montecino M
, Maass A
, González M
, Allende ML
, Hodar C
, Irles P
(2023). DNA sequencing in the classroom: complete genome sequence of two earwig
(Dermaptera; Insecta) species.
Biol Res
56
, 6
.
PubMed
11.-
Pacheco JM
, Song L
, Kuběnová L
, Ovečka M
, Berdion Gabarain V
, Peralta JM
, Lehuedé TU
, Ibeas MA
, Ricardi MM
, Zhu S
, Shen Y
, Schepetilnikov M
, Ryabova LA
, Alvarez JM
, Gutiérrez RA
, Grossmann G
, Šamaj J
, Yu F
, Estevez JM
(2023). Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling
controls root hair growth at low temperature linked to low nitrate in Arabidopsis
thaliana.
New Phytol
238
, 169-185
.
PubMed
12.-
Lamig L
, Moreno S
, Álvarez JM
, Gutiérrez RA
(2022). Molecular mechanisms underlying nitrate responses in plants.
Curr Biol
32
, R433-R439
.
PubMed
13.-
Dussarrat T
, Prigent S
, Latorre C
, Bernillon S
, Flandin A
, Díaz FP
, Cassan C
, Van Delft P
, Jacob D
, Varala K
, Joubes J
, Gibon Y
, Rolin D
, Gutiérrez RA
, Pétriacq P
(2022). Predictive metabolomics of multiple Atacama plant species unveils a core set of
generic metabolites for extreme climate resilience.
New Phytol
234
, 1614-1628
.
PubMed
14.-
Maldonado JE
, Gaete A
, Mandakovic D
, Aguado-Norese C
, Aguilar M
, Gutiérrez RA
, González M
(2022). Partners to survive: Hoffmannseggia doellii root-associated microbiome at the
Atacama Desert.
New Phytol
234
, 2126-2139
.
PubMed
15.-
Swift J
, Alvarez JM
, Araus V
, Gutiérrez RA
, Coruzzi GM
(2020). Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten
kinetics underlie plant growth rates.
Proc Natl Acad Sci U S A
117
, 12531-12540
.
PubMed
16.-
Contreras-Lopez O, Vidal EA, Riveras E, Alvarez JM, Moyano TC, Sparks EE, Medina J, Pasquino A, Benfey PN, Coruzzi GM, Gutiérrez RA (2022). Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.
Proc Natl Acad Sci U S A 119.
PubMed
17.-
Di Genova A, Nardocci G, Maldonado-Agurto R, Hodar C, Valdivieso C, Morales P, Gajardo F, Marina R, Gutiérrez RA, Orellana A, Cambiazo V, Gonzalez M, Glavic A, Mendez MA, Maass A, Allende ML, Montecino MA (2022). Genome sequencing and transcriptomic analysis of the Andean killifish Orestias ascotanensis reveals adaptation to high-altitude aquatic life.
Genomics 114, 305-315.
PubMed
18.-
Eshel G, Araus V, Undurraga S, Soto DC, Moraga C, Montecinos A, Moyano T, Maldonado J, Diaz FP, Varala K, Nelson CW, Contreras-Lopez O, Pal-Gabor H, Kraiser T, Carrasco-Puga G, Nilo-Poyanco R, Zegar CM, Orellana A, Montecino M, Maass A, Allende ML, DeSalle R, Stevenson DW, Gonzalez M, Latorre C, Coruzzi GM, Gutiérrez RA (2021). Plant ecological genomics at the limits of life in the Atacama Desert.
Proc Natl Acad Sci U S A 118.
PubMed
19.-
Gonzalez-Martin A, Moyano T, Gutierrez DA, Carvajal FJ, Cerpa W, Hanley JG, Gutiérrez RA, Alvarez AR (2021). c-Abl regulates a synaptic plasticity-related transcriptional program involved in memory and learning.
Prog Neurobiol 205, 102122.
PubMed
20.-
Moyano TC, Gutiérrez RA, Alvarez JM (2021). Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks.
Methods Mol Biol 2328, 25-46.
PubMed
21.-
Vega A, Fredes I, O'Brien J, Shen Z, Otvos K, Abualia R, Benkova E, Briggs SP, Gutiérrez RA (2021). Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture.
EMBO Rep 22, e51813.
PubMed
22.-
Ruffel S, Chaput V, Przybyla-Toscano J, Fayos I, Ibarra C, Moyano T, Fizames C, Tillard P, O'Brien JA, Gutiérrez RA, Gojon A, Lejay L (2021). Genome-wide analysis in response to nitrogen and carbon identifies regulators for root AtNRT2 transporters.
Plant Physiol 186, 696-714.
PubMed
23.-
Carrasco-Puga G, Díaz FP, Soto DC, Hernández-Castro C, Contreras-López O, Maldonado A, Latorre C, Gutiérrez RA (2021). Revealing hidden plant diversity in arid environments
Ecography , 98-111.
PubMed
24.-
Herrera-Vasquez A, Fonseca A, Ugalde JM, Lamig L, Seguel A, Moyano TC, Gutiérrez RA, Salinas P, Vidal EA, Holuigue L (2021). TGA class II transcription factors are essential to restrict oxidative stress in response to UV-B stress in Arabidopsis.
J Exp Bot 72, 1891-1905.
PubMed
25.-
Otvos K, Marconi M, Vega A, O'Brien J, Johnson A, Abualia R, Antonielli L, Montesinos JC, Zhang Y, Tan S, Cuesta C, Artner C, Bouguyon E, Gojon A, Friml J, Gutiérrez RA, Wabnik K, Benkova E (2021). Modulation of plant root growth by nitrogen source-defined regulation of polar auxin transport.
EMBO J 40, e106862.
PubMed
26.-
Zuniga LM, Andrade JC, Fabrega-Gueren F, Orihuela PA, Velasquez EV, Vidal EA, Gutiérrez RA, Morales P, Gomez-Silva B, Croxatto HB (2021). Mating induces early transcriptional response in the rat endosalpinx: the role of TNF and RA.
Reproduction 161, 43-59.
PubMed
27.-
Dussarrat T, Decros G, Díaz FP, Gibon Y, Latorre C, Rolin D, Gutiérrez RA, Pétriacq P (2021). Another Tale from the Harsh World: How Plants Adapt to Extreme Environments
Annual Plant Reviews online. 7, 551-603.
PubMed
28.-
Guajardo L, Aguilar R, Bustos FJ, Nardocci G, Gutiérrez RA, van Zundert B, Montecino M (2020). Downregulation of the Polycomb-Associated Methyltransferase Ezh2 during Maturation of Hippocampal Neurons Is Mediated by MicroRNAs Let-7 and miR-124.
Int J Mol Sci 21.
PubMed
29.-
Wozniak A, Cerda A, Ibarra-Henriquez C, Sebastian V, Armijo G, Lamig L, Miranda C, Lagos M, Solari S, Guzman AM, Quiroga T, Hitschfeld S, Riveras E, Ferres M, Gutiérrez RA, Garcia P (2020). A simple RNA preparation method for SARS-CoV-2 detection by RT-qPCR.
Sci Rep 10, 16608.
PubMed
30.-
Vidal EA, Alvarez JM, Araus V, Riveras E, Brooks MD, Krouk G, Ruffel S, Lejay L, Crawford NM, Coruzzi GM, Gutiérrez RA, Vidal EA, Alvarez JM, Araus V, Riveras E, Brooks M, Krouk G, Ruffel S, Lejay L, Crawford N, Coruzzi GM, Gutiérrez RA (2020). Nitrate in 2020: Thirty Years from Transport to Signaling Networks.Nitrate 2020: Thirty years from transport to signaling networks.
Plant CellPlant Cell 32, 2094-2119.
PubMed
31.-
Swift J, Alvarez JM, Araus V, Gutiérrez RA, Coruzzi GM, Swift J, Alvarez JM, Araus V, Gutiérrez RA, Coruzzi GM (2020). Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates.Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates.
Proc Natl Acad Sci U S AProc Natl Acad Sci U S A 117117, 12531-1254012531-12540.
PubMed
32.-
Moreno S, Canales J, Hong L, Robinson D, Roeder AHK, Gutiérrez RA, Moreno S, Canales J, Hong L, Robinson D, Roeder AHK, Gutiérrez RA (2020). Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell Division in Arabidopsis thaliana.Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell Division in Arabidopsis thaliana.
Curr BiolCurr Biol 3030, 1988-2000.e31988-2000.e3.
PubMed
33.-
Riveras E, Azocar L, Moyano TC, Ocares M, Molina H, Romero D, Roa JC, Valbuena JR, Gutiérrez RA, Miquel JF (2020). Transcriptomic profiles reveal differences in zinc metabolism, inflammation, and tight junction proteins in duodenum from cholesterol gallstone subjects.
Sci Rep 10, 7448.
PubMed
34.-
Cruz N, Méndez T, Ramos P, Urbina D, Vega A, Gutiérrez RA, Moya-León MA, Herrera R (2019). Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy.
Sci Rep 9, 18981.
PubMed
35.-
Naulin PA, Armijo GI, Vega AS, Tamayo KP, Gras DE, de la Cruz J, Gutiérrez RA (2020). Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana.
Plant Cell Physiol 61, 342-352.
PubMed
36.-
Wood, J, Díaz, F, Latorre, C, Wilmshurst, J, Burge, O, González, F, Gutiérrez RA (2019). Ancient parasite DNA from late Quaternary Atacama Desert rodent middens.
Quat. Sci Rev 226, 106031.
37.-
Vega A, O'Brien JA, Gutiérrez RA (2019). Nitrate and hormonal signaling crosstalk for plant growth and development.
Curr Opin Plant Biol 52, 155-163.
PubMed
38.-
Alvarez JM, Moyano TC, Zhang T, Gras DE, Herrera FJ, Araus V, O'Brien JA, Carrillo L, Medina J, Vicente-Carbajosa J, Jiang J, Gutiérrez RA (2019). Local Changes in Chromatin Accessibility and Transcriptional Networks Underlying the Nitrate Response in Arabidopsis Roots.
Mol Plant 12, 1545-1560.
PubMed
39.-
Pérez-Palma E, Bustos BI, Lal D, Buch S, Azocar L, Toliat MR, Lieb W, Franke A, Hinz S, Burmeister G, von Shönfels W, Schafmayer C, Ahnert P, Völzke H, Völker U, Homuth G, Lerch MM, Puschel K, Gutiérrez RA, Hampe J, Nürnberg P, Miquel JF, De Ferrari GV (2020). Copy number variants in lipid metabolism genes are associated with gallstones disease in men.
Eur J Hum Genet 28, 264-273.
PubMed
40.-
Falter-Braun P, Brady S, Gutiérrez RA, Coruzzi GM, Krouk G (2019). iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community.
Mol Plant 12, 727-730.
PubMed
41.-
Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM (2019). Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions.
Nat Commun 10, 1569.
PubMed
42.-
Vidal EA, Moyano TC, Bustos BI, Perez-Palma E, Moraga C, Riveras E, Montecinos A, Azocar L, Soto DC, Vidal M, Di Genova A, Puschel K, Nurnberg P, Buch S, Hampe J, Allende ML, Cambiazo V, Gonzalez M, Hodar C, Montecino M, Munoz-Espinoza C, Orellana A, Reyes-Jara A, Travisany D, Vizoso P, Moraga M, Eyheramendy S, Maass A, De Ferrari GV, Miquel JF, Gutiérrez RA (2019). Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans.
Sci Rep 9, 2132.
PubMed
43.-
Salazar, M, Valenzuela, D, Tironi, M, Gutiérrez RA (2019). The ambivalent regulator: the construction of a regulatory style for genetically modified crops in Chile
Tapuya: Latin American Science, Technology and Society 2, 199-219.
PubMed
44.-
Diaz FP, Latorre C, Carrasco-Puga G, Wood JR, Wilmshurst JM, Soto DC, Cole TL, Gutiérrez RA (2019). Multiscale climate change impacts on plant diversity in the Atacama Desert.
Glob Chang Biol 25, 1733-1745.
PubMed
45.-
Fernandez-Gomez B, Maldonado J, Mandakovic D, Gaete A, Gutiérrez RA, Maass A, Cambiazo V, Gonzalez M (2019). Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils.
Sci Rep 9, 1042.
PubMed
46.-
Bustos BI, Perez-Palma E, Buch S, Azocar L, Riveras E, Ugarte GD, Toliat M, Nurnberg P, Lieb W, Franke A, Hinz S, Burmeister G, von Schonfels W, Schafmayer C, Volzke H, Volker U, Homuth G, Lerch MM, Santos JL, Puschel K, Bambs C, Roa JC, Gutiérrez RA, Hampe J, De Ferrari GV, Miquel JF (2019). Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry.
Sci Rep 9, 772.
PubMed
47.-
Pollak B, Cerda A, Delmans M, Alamos S, Moyano T, West A, Gutiérrez RA, Patron NJ, Federici F, Haseloff J (2019). Loop assembly: a simple and open system for recursive fabrication of DNA circuits.
New Phytol 222, 628-640.
PubMed
48.-
Fredes I, Moreno S, Diaz FP, Gutiérrez RA (2019). Nitrate signaling and the control of Arabidopsis growth and development.
Curr Opin Plant Biol 47, 112-118.
PubMed
49.-
Wood JR, Diaz FP, Latorre C, Wilmshurst JM, Burge OR, Gutiérrez RA (2018). Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile.
Sci Rep 8, 17208.
PubMed
50.-
Mandakovic D, Rojas C, Maldonado J, Latorre M, Travisany D, Delage E, Bihouee A, Jean G, Diaz FP, Fernandez-Gomez B, Cabrera P, Gaete A, Latorre C, Gutiérrez RA, Maass A, Cambiazo V, Navarrete SA, Eveillard D, Gonzalez M (2018). Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience.
Sci Rep 8, 5875.
PubMed
51.-
Contreras-Lopez O, Moyano TC, Soto DC, Gutiérrez RA (2018). Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data.
Methods Mol Biol 1761, 275-301.
PubMed
52.-
Gras DE, Vidal EA, Undurraga SF, Riveras E, Moreno S, Dominguez-Figueroa J, Alabadi D, Blazquez M, Medina J, Gutiérrez RA (2017). SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
J Exp Bot .
PubMed
53.-
Canales J, Contreras-Lopez O, Alvarez JM, Gutiérrez RA (2017). Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
Plant J 92, 305-316.
PubMed
54.-
Armijo G, Gutiérrez RA (2017). Emerging Players in the Nitrate Signaling Pathway.
Mol Plant 10, 1019-1022.
PubMed
55.-
Undurraga SF, Ibarra-Henriquez C, Fredes I, Alvarez JM, Gutiérrez RA (2017). Nitrate signaling and early responses in Arabidopsis roots.
J Exp Bot 68, 2541-2551.
PubMed
56.-
Friesner J, Assmann SM, Bastow R, Bailey-Serres J, Beynon J, Brendel V, Buell CR, Bucksch A, Busch W, Demura T, Dinneny JR, Doherty CJ, Eveland AL, Falter-Braun P, Gehan MA, Gonzales M, Grotewold E, Gutiérrez RA, Kramer U, Krouk G, Ma S, Markelz RJC, Megraw M, Meyers BC, Murray JAH, Provart NJ, Rhee S, Smith R, Spalding EP, Taylor C, Teal TK, Torii KU, Town C, Vaughn M, Vierstra R, Ware D, Wilkins O, Williams C, Brady SM (2017). The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.
Plant Physiol 175, 1499-1509.
PubMed
57.-
Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SS, Chen H, Ramachandran N, Altmann S, Gutiérrez RA, Hill DE, Schroeder JI, Chory J, LaBaer J, Vidal M, Braun P, Ecker JR (2016). Mapping transcription factor interactome networks using HaloTag protein arrays.
Proc Natl Acad Sci U S A 113, E4238-47.
PubMed
58.-
Puelma T, Araus V, Canales J, Vidal EA, Cabello JM, Soto A, Gutiérrez RA (2017). GENIUS: web server to predict local gene networks and key genes for biological functions.
Bioinformatics 33, 760-761.
PubMed
59.-
O'Brien JA, Vega A, Bouguyon E, Krouk G, Gojon A, Coruzzi G, Gutiérrez RA (2016). Nitrate Transport, Sensing, and Responses in Plants.
Mol Plant 9, 837-56.
PubMed
60.-
Araus V, Vidal EA, Puelma T, Alamos S, Mieulet D, Guiderdoni E, Gutiérrez RA (2016). Members of BTB Gene Family of Scaffold Proteins Suppress Nitrate Uptake and Nitrogen Use Efficiency.
Plant Physiol 171, 1523-32.
PubMed
61.-
Perez-Delgado CM, Moyano TC, Garcia-Calderon M, Canales J, Gutiérrez RA, Marquez AJ, Betti M (2016). Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism.
J Exp Bot 67, 3095-108.
PubMed
62.-
Diaz FP, Frugone M, Gutiérrez RA, Latorre C (2016). Nitrogen cycling in an extreme hyperarid environment inferred from delta(15)N analyses of plants, soils and herbivore diet.
Sci Rep 6, 22226.
PubMed
63.-
Vega A, Canessa P, Hoppe G, Retamal I, Moyano TC, Canales J, Gutiérrez RA, Rubilar J (2015). Transcriptome analysis reveals regulatory networks underlying differential susceptibility to Botrytis cinerea in response to nitrogen availability in Solanum lycopersicum.
Front Plant Sci 6, 911.
PubMed
64.-
Riveras E, Alvarez JM, Vidal EA, Oses C, Vega A, Gutiérrez RA (2015). The Calcium Ion Is a Second Messenger in the Nitrate Signaling Pathway of Arabidopsis.
Plant Physiol 169, 1397-404.
PubMed
65.-
Vidal EA, Alvarez JM, Moyano TC, Gutiérrez RA (2015). Transcriptional networks in the nitrate response of Arabidopsis thaliana.
Curr Opin Plant Biol 27, 125-32.
PubMed
66.-
Acuna M, Martinez P, Moraga C, He X, Moraga M, Hunter B, Nuernberg P, Gutiérrez RA, Gonzalez M, Schuchman EH, Luis Santos J, Miquel JF, Mabe P, Zanlungo S (2015). Epidemiological, clinical and biochemical characterization of the p.(Ala359Asp) SMPD1 variant causing Niemann-Pick disease type B.
Eur J Hum Genet .
PubMed
67.-
Moyano TC, Vidal EA, Contreras-Lopez O, Gutiérrez RA (2015). Constructing simple biological networks for understanding complex high-throughput data in plants.
Methods Mol Biol 1284, 503-26.
PubMed
68.-
Vidal EA, Moyano TC, Canales J, Gutiérrez RA (2014). Nitrogen control of developmental phase transitions in Arabidopsis thaliana.
J Exp Bot .
PubMed
69.-
Alvarez JM, Riveras E, Vidal EA, Gras DE, Contreras-Lopez O, Tamayo KP, Aceituno F, Gomez I, Ruffel S, Lejay L, Jordana X, Gutiérrez RA (2014). Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots.
Plant J .
PubMed
70.-
Vidal EA, Alvarez JM, Gutiérrez RA (2014). Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
Plant Signal Behav 9.
PubMed
72.-
Federici F, Rudge TJ, Pollak B, Haseloff J, Gutiérrez RA (2013). Synthetic Biology: opportunities for Chilean bioindustry and education.
Biol Res 46, 383-93.
PubMed
74.-
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA (2013). Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
BMC Genomics 14, 701.
PubMed
75.-
Zuniga A, Poupin MJ, Donoso R, Ledger T, Guiliani N, Gutiérrez RA, Gonzalez B (2013). Quorum sensing and indole-3-acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN.
Mol Plant Microbe Interact 26, 546-53.
PubMed
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76.-
Puelma T, Gutiérrez RA, Soto A (2012). Discriminative local subspaces in gene expression data for effective gene function prediction.
Bioinformatics 28, 2256-64.
PubMed
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78.-
Alvarez JM, Vidal EA, Gutiérrez RA (2012). Integration of local and systemic signaling pathways for plant N responses.
Curr Opin Plant Biol 15, 185-91.
PubMed
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79.-
Fuentes D, Meneses M, Nunes-Nesi A, Araujo WL, Tapia R, Gomez I, Holuigue L, Gutiérrez RA, Fernie AR, Jordana X (2011). A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions.
Plant Physiol 157, 1114-27.
PubMed
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80.-
Vega A, Gutiérrez RA, Pena-Neira A, Cramer GR, Arce-Johnson P (2011). Compatible GLRaV-3 viral infections affect berry ripening decreasing sugar accumulation and anthocyanin biosynthesis in Vitis vinifera.
Plant Mol Biol 77, 261-74.
PubMed
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82.-
Kraiser T, Gras DE, Gutierrez AG, Gonzalez B, Gutiérrez RA (2011). A holistic view of nitrogen acquisition in plants.
J Exp Bot 62, 1455-66.
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84.-
Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA (2010). Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.
Proc Natl Acad Sci U S A .
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86.-
Vidal EA, Tamayo KP, Gutiérrez RA (2010). Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana.
Wiley Interdiscip Rev Syst Biol Med 2, 683-93.
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88.-
Das M, Reichman JR, Haberer G, Welzl G, Aceituno FF, Mader MT, Watrud LS, Pfleeger TG, Gutiérrez RA, Schaffner AR, Olszyk DM (2010). A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus.
Plant Mol Biol 72, 545-56.
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90.-
Reforgiato D, Gutiérrez RA, Shasha D (2008). GraphClust: A Method for Clustering Database of Graphs.
J Information & Knowledge Management. 7, 231-241.
91.-
Bender J, Benfey P, Bergmann D, Borevitz J, Coruzzi G, Dangl J, Dean C, Ecker J, Estelle M, Glazebrook J, Grant S, Guerinot ML, Gutierrez R, Long J, Nordborg M, Poethig S, Raikhel N, Schmitt J, Schnittger A, Vidal M (2008). 2020 vision for biology: the role of plants in addressing grand challenges in biology.
Mol Plant 1, 561-3.
PubMed
92.-
Aceituno FF, Moseyko N, Rhee SY, Gutiérrez RA (2008). The rules of gene expression in plants: Organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana.
BMC Genomics 9, 438.
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[Supplemental Material]
93.-
Holuigue L, Vielle-Calzada JP, Gutiérrez RA (2008). Crops in all shapes and sizes.
Genome Biol 9, 319.
PubMed
94.-
Vidal EA, Gutiérrez RA (2008). A systems view of nitrogen nutrient and metabolite responses in Arabidopsis.
Curr Opin Plant Biol 11, 521-9.
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96.-
Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM (2008). Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1.
Proc Natl Acad Sci U S A 105, 4939-44.
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98.-
Gutiérrez RA, Gifford ML, Poultney C, Wang R, Shasha DE, Coruzzi GM, Crawford NM (2007). Insights into the genomic nitrate response using genetics and the Sungear Software System.
J Exp Bot 58, 2359-67.
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100.-
Poultney CS, Gutiérrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE (2007). Sungear: interactive visualization and functional analysis of genomic datasets.
Bioinformatics 23, 259-61.
PubMed
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102.-
Lidder P*, Gutiérrez RA*, Salome PA, McClung CR, Green PJ (2005). Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway. *Both authors contributed equally.
Plant Physiol 138, 2374-85.
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104.-
Wang R, Tischner R, Gutiérrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM (2004). Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis.
Plant Physiol 136, 2512-22.
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106.-
Gutiérrez RA*, Green PJ, Keegstra K, Ohlrogge JB (2004). Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms? *Corresponding author.
Genome Biol 5, R53.
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108.-
Ghosh D, Sawicki M, Lala P, Erman M, Pangborn W, Eyzaguirre J, Gutierrez R, Jornvall H, Thiel DJ (2001). Multiple conformations of catalytic serine and histidine in acetylxylan esterase at 0.90 A.
J Biol Chem 276, 11159-66.
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110.-
Ghosh D, Erman M, Sawicki M, Lala P, Weeks DR, Li N, Pangborn W, Thiel DJ, Jornvall H, Gutierrez R, Eyzaguirre J (1999). Determination of a protein structure by iodination: the structure of iodinated acetylxylan esterase.
Acta Crystallogr D Biol Crystallogr 55 ( Pt 4), 779-84.
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112.-
Egana L, Gutierrez R, Caputo V, Peirano A, Steiner J, Eyzaguirre J (1996). Purification and characterization of two acetyl xylan esterases from Penicillium purpurogenum.
Biotechnol Appl Biochem 24 ( Pt 1), 33-9.
PubMed