Millennium Nucleus Center for Plant Systems and Sinthetic Biology

Publications

1.- Vidal EA, Alvarez JM, Gutierrez RA (2014). Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav 9, e28501. PubMed

2.- Canales J, Moyano TC, Villarroel E, Gutierrez RA (2014). Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments. Front Plant Sci 5, 22. PubMed

3.- Kuhn N, Guan L, Dai ZW, Wu BH, Lauvergeat V, Gomes E, Li SH, Godoy F, Arce-Johnson P, Delrot S (2014). Berry ripening: recently heard through the grapevine. J Exp Bot 65, 4543-59. PubMed

4.- Lecourieux F, Kappel C, Lecourieux D, Serrano A, Torres E, Arce-Johnson P, Delrot S (2014). An update on sugar transport and signalling in grapevine. J Exp Bot 65, 821-32. PubMed

5.- Vidal EA, Moyano TC, Riveras E, Contreras-Lopez O, Gutierrez RA (2013). Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots. Proc Natl Acad Sci U S A 110, 12840-5. PubMed

6.- Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA (2013). Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics 14, 701. PubMed

7.- Federici F, Rudge TJ, Pollak B, Haseloff J, Gutierrez RA (2013). Synthetic Biology: opportunities for Chilean bioindustry and education. Biol Res 46, 383-93. PubMed

8.- Inostroza-Blancheteau C, Aquea F, Loyola R, Slovin J, Josway S, Rengel Z, Reyes-Diaz M, Alberdi M, Arce-Johnson P (2013). Molecular characterisation of a calmodulin gene, VcCaM1, that is differentially expressed under aluminium stress in highbush blueberry. Plant Biol (Stuttg) 15, 1013-8. PubMed

9.- Canon P, Aquea F, Rodriguez-Hoces de la Guardia A, Arce-Johnson P (2013). Functional characterization of Citrus macrophylla BOR1 as a boron transporter. Physiol Plant 149, 329-39. PubMed

10.- Alvarez Viveros MF, Inostroza-Blancheteau C, Timmermann T, Gonzalez M, Arce-Johnson P (2013). Overexpression of GlyI and GlyII genes in transgenic tomato (Solanum lycopersicum Mill.) plants confers salt tolerance by decreasing oxidative stress. Mol Biol Rep 40, 3281-90. PubMed

11.- Espinoza C, Schlechter R, Herrera D, Torres E, Serrano A, Medina C, Arce-Johnson P (2013). Cisgenesis and intragenesis: new tools for improving crops. Biol Res 46, 323-31. PubMed

12.- Armijo G, Salinas P, Monteoliva MI, Seguel A, Garcia C, Villarroel-Candia E, Song W, van der Krol AR, Alvarez ME, Holuigue L (2013). A salicylic acid-induced lectin-like protein plays a positive role in the effector-triggered immunity response of Arabidopsis thaliana to Pseudomonas syringae Avr-Rpm1. Mol Plant Microbe Interact 26, 1395-406. PubMed

13.- Arenas-M A, Takenaka M, Moreno S, Gomez I, Jordana X (2013). Contiguous RNA editing sites in the mitochondrial nad1 transcript of Arabidopsis thaliana are recognized by different proteins. FEBS Lett 587, 887-91. PubMed

14.- Sew YS, Stroher E, Holzmann C, Huang S, Taylor NL, Jordana X, Millar AH (2013). Multiplex micro-respiratory measurements of Arabidopsis tissues. New Phytol 200, 922-32. PubMed

15.- Poupin MJ, Timmermann T, Vega A, Zuniga A, Gonzalez B (2013). Effects of the plant growth-promoting bacterium Burkholderia phytofirmans PsJN throughout the life cycle of Arabidopsis thaliana. PLoS One 8, e69435. PubMed

16.- Zuniga A, Poupin MJ, Donoso R, Ledger T, Guiliani N, Gutierrez RA, Gonzalez B (2013). Quorum sensing and indole-3-acetic acid degradation play a role in colonization and plant growth promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN. Mol Plant Microbe Interact 26, 546-53. PubMed

17.- Alvarez JM, Vidal EA, Gutierrez RA (2012). Integration of local and systemic signaling pathways for plant N responses. Curr Opin Plant Biol 15, 185-91. PubMed

18.- Puelma T, Gutierrez RA, Soto A (2012). Discriminative local subspaces in gene expression data for effective gene function prediction. Bioinformatics 28, 2256-64. PubMed

19.- Gutierrez RA (2012). Systems biology for enhanced plant nitrogen nutrition. Science 336, 1673-5. PubMed

20.- Inostroza-Blancheteau C, Rengel Z, Alberdi M, de la Luz Mora M, Aquea F, Arce-Johnson P, Reyes-Diaz M (2012). Molecular and physiological strategies to increase aluminum resistance in plants. Mol Biol Rep 39, 2069-79. PubMed

21.- Kuhn N, Arce-Johnson P (2012). Pollination: a key event controlling the expression of genes related to phytohormone biosynthesis during grapevine berry formation. Plant Signal Behav 7, 7-11. PubMed

22.- Aquea F, Federici F, Moscoso C, Vega A, Jullian P, Haseloff J, Arce-Johnson P (2012). A molecular framework for the inhibition of Arabidopsis root growth in response to boron toxicity. Plant Cell Environ 35, 719-34. PubMed

23.- Laporte D, Olate E, Salinas P, Salazar M, Jordana X, Holuigue L (2012). Glutaredoxin GRXS13 plays a key role in protection against photooxidative stress in Arabidopsis. J Exp Bot 63, 503-15. PubMed

24.- Besaury L, Ouddane B, Pavissich JP, Dubrulle-Brunaud C, Gonzalez B, Quillet L (2012). Impact of copper on the abundance and diversity of sulfate-reducing prokaryotes in two chilean marine sediments. Mar Pollut Bull 64, 2135-45. PubMed

25.- Ledger T, Zuniga A, Kraiser T, Dasencich P, Donoso R, Perez-Pantoja D, Gonzalez B (2012). Aromatic compounds degradation plays a role in colonization of Arabidopsis thaliana and Acacia caven by Cupriavidus pinatubonensis JMP134. Antonie Van Leeuwenhoek 101, 713-23. PubMed

26.- De la Iglesia R, Valenzuela-Heredia D, Andrade S, Correa J, Gonzalez B (2012). Composition dynamics of epilithic intertidal bacterial communities exposed to high copper levels. FEMS Microbiol Ecol 79, 720-7. PubMed

27.- Perez-Pantoja D, Donoso R, Agullo L, Cordova M, Seeger M, Pieper DH, Gonzalez B (2012). Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Environ Microbiol 14, 1091-117. PubMed

28.- Krouk G, Ruffel S, Gutierrez RA, Gojon A, Crawford NM, Coruzzi GM, Lacombe B (2011). A framework integrating plant growth with hormones and nutrients. Trends Plant Sci 16, 178-82. PubMed

29.- Galbiati M, Matus JT, Francia P, Rusconi F, Canon P, Medina C, Conti L, Cominelli E, Tonelli C, Arce-Johnson P (2011). The grapevine guard cell-related VvMYB60 transcription factor is involved in the regulation of stomatal activity and is differentially expressed in response to ABA and osmotic stress. BMC Plant Biol 11, 142. PubMed

30.- Vega A, Gutierrez RA, Pena-Neira A, Cramer GR, Arce-Johnson P (2011). Compatible GLRaV-3 viral infections affect berry ripening decreasing sugar accumulation and anthocyanin biosynthesis in Vitis vinifera. Plant Mol Biol 77, 261-74. PubMed

31.- Inostroza-Blancheteau C, Reyes-Diaz M, Aquea F, Nunes-Nesi A, Alberdi M, Arce-Johnson P (2011). Biochemical and molecular changes in response to aluminium-stress in highbush blueberry (Vaccinium corymbosum L.). Plant Physiol Biochem 49, 1005-12. PubMed

32.- Inostroza-Blancheteau C, Aquea F, Reyes-Diaz M, Alberdi M, Arce-Johnson P (2011). Identification of aluminum-regulated genes by cDNA-AFLP analysis of roots in two contrasting genotypes of highbush blueberry (Vaccinium corymbosum L.). Mol Biotechnol 49, 32-41. PubMed

33.- Vera J, Castro J, Gonzalez A, Barrientos H, Matsuhiro B, Arce P, Zuniga G, Moenne A (2011). Long-term protection against tobacco mosaic virus induced by the marine alga oligo-sulphated-galactan Poly-Ga in tobacco plants. Mol Plant Pathol 12, 437-47. PubMed

34.- Aquea F, Vega A, Timmermann T, Poupin MJ, Arce-Johnson P (2011). Genome-wide analysis of the SET DOMAIN GROUP family in grapevine. Plant Cell Rep 30, 1087-97. PubMed

35.- Dauelsberg P, Matus JT, Poupin MJ, Leiva-Ampuero A, Godoy F, Vega A, Arce-Johnson P (2011). Effect of pollination and fertilization on the expression of genes related to floral transition, hormone synthesis and berry development in grapevine. J Plant Physiol 168, 1667-74. PubMed

36.- Fuentes D, Meneses M, Nunes-Nesi A, Araujo WL, Tapia R, Gomez I, Holuigue L, Gutierrez RA, Fernie AR, Jordana X (2011). A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions. Plant Physiol 157, 1114-27. PubMed

37.- Daurelio LD, Petrocelli S, Blanco F, Holuigue L, Ottado J, Orellano EG (2011). Transcriptome analysis reveals novel genes involved in nonhost response to bacterial infection in tobacco. J Plant Physiol 168, 382-91. PubMed

38.- Araujo WL, Nunes-Nesi A, Osorio S, Usadel B, Fuentes D, Nagy R, Balbo I, Lehmann M, Studart-Witkowski C, Tohge T, Martinoia E, Jordana X, Damatta FM, Fernie AR (2011). Antisense inhibition of the iron-sulphur subunit of succinate dehydrogenase enhances photosynthesis and growth in tomato via an organic acid-mediated effect on stomatal aperture. Plant Cell 23, 600-27. PubMed

39.- Donoso RA, Perez-Pantoja D, Gonzalez B (2011). Strict and direct transcriptional repression of the pobA gene by benzoate avoids 4-hydroxybenzoate degradation in the pollutant degrader bacterium Cupriavidus necator JMP134. Environ Microbiol 13, 1590-600. PubMed

40.- Kraiser T, Gras DE, Gutierrez AG, Gonzalez B, Gutierrez RA (2011). A holistic view of nitrogen acquisition in plants. J Exp Bot 62, 1455-66. PubMed

41.- Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutierrez RA (2010). VirtualPlant: a software platform to support systems biology research. Plant Physiol 152, 500-15. PubMed

42.- Das M, Reichman JR, Haberer G, Welzl G, Aceituno FF, Mader MT, Watrud LS, Pfleeger TG, Gutierrez RA, Schaffner AR, Olszyk DM (2010). A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus. Plant Mol Biol 72, 545-56. PubMed

43.- Vidal EA, Tamayo KP, Gutierrez RA (2010). Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana. Wiley Interdiscip Rev Syst Biol Med 2, 683-93. PubMed

44.- Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutierrez RA (2010). Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana. Proc Natl Acad Sci U S A 107, 4477-82. PubMed

45.- McClung CR, Gutierrez RA (2010). Network news: prime time for systems biology of the plant circadian clock. Curr Opin Genet Dev 20, 588-98. PubMed

46.- (2010). An international bioinformatics infrastructure to underpin the Arabidopsis community. Plant Cell 22, 2530-6. PubMed

47.- Matus JT, Poupin MJ, Canon P, Bordeu E, Alcalde JA, Arce-Johnson P (2010). Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.). Plant Mol Biol 72, 607-20. PubMed

48.- Aquea F, Johnston AJ, Canon P, Grossniklaus U, Arce-Johnson P (2010). TRAUCO, a Trithorax-group gene homologue, is required for early embryogenesis in Arabidopsis thaliana. J Exp Bot 61, 1215-24. PubMed

49.- Aquea F, Timmermann T, Arce-Johnson P (2010). Analysis of histone acetyltransferase and deacetylase families of Vitis vinifera. Plant Physiol Biochem 48, 194-9. PubMed

50.- Rodor J, Letelier I, Holuigue L, Echeverria M (2010). Nucleolar RNPs: from genes to functional snoRNAs in plants. Biochem Soc Trans 38, 672-6. PubMed

51.- Castandet B, Choury D, Begu D, Jordana X, Araya A (2010). Intron RNA editing is essential for splicing in plant mitochondria. Nucleic Acids Res 38, 7112-21. PubMed

52.- Lykidis A, Perez-Pantoja D, Ledger T, Mavromatis K, Anderson IJ, Ivanova NN, Hooper SD, Lapidus A, Lucas S, Gonzalez B, Kyrpides NC (2010). The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader. PLoS One 5, e9729. PubMed

53.- Hengst MB, Andrade S, Gonzalez B, Correa JA (2010). Changes in epiphytic bacterial communities of intertidal seaweeds modulated by host, temporality, and copper enrichment. Microb Ecol 60, 282-90. PubMed

54.- Gazitua MC, Slater AW, Melo F, Gonzalez B (2010). Novel alpha-ketoglutarate dioxygenase tfdA-related genes are found in soil DNA after exposure to phenoxyalkanoic herbicides. Environ Microbiol 12, 2411-25. PubMed

55.- De la Iglesia R, Valenzuela-Heredia D, Pavissich JP, Freyhoffer S, Andrade S, Correa JA, Gonzalez B (2010). Novel polymerase chain reaction primers for the specific detection of bacterial copper P-type ATPases gene sequences in environmental isolates and metagenomic DNA. Lett Appl Microbiol 50, 552-62. PubMed

56.- Pavissich JP, Silva M, Gonzalez B (2010). Sulfate reduction, molecular diversity, and copper amendment effects in bacterial communities enriched from sediments exposed to copper mining residues. Environ Toxicol Chem 29, 256-64. PubMed

57.- Morgante V, Lopez-Lopez A, Flores C, Gonzalez M, Gonzalez B, Vasquez M, Rossello-Mora R, Seeger M (2010). Bioaugmentation with Pseudomonas sp. strain MHP41 promotes simazine attenuation and bacterial community changes in agricultural soils. FEMS Microbiol Ecol 71, 114-26. PubMed

58.- Krouk G, Tranchina D, Lejay L, Cruikshank AA, Shasha D, Coruzzi GM, Gutierrez RA (2009). A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis. PLoS Comput Biol 5, e1000326. PubMed

59.- Matus JT, Loyola R, Vega A, Pena-Neira A, Bordeu E, Arce-Johnson P, Alcalde JA (2009). Post-veraison sunlight exposure induces MYB-mediated transcriptional regulation of anthocyanin and flavonol synthesis in berry skins of Vitis vinifera. J Exp Bot 60, 853-67. PubMed

60.- Aquea F, Matte JP, Gutierrez F, Rico S, Lamprecht M, Sanchez C, Arce-Johnson P (2009). Molecular characterization of a Trithorax-group homologue gene from Pinus radiata. Plant Cell Rep 28, 1531-8. PubMed

61.- Blanco F, Salinas P, Cecchini NM, Jordana X, Van Hummelen P, Alvarez ME, Holuigue L (2009). Early genomic responses to salicylic acid in Arabidopsis. Plant Mol Biol 70, 79-102. PubMed

62.- Cecchini NM, Monteoliva MI, Blanco F, Holuigue L, Alvarez ME (2009). Features of basal and race-specific defences in photosynthetic Arabidopsis thaliana suspension cultured cells. Mol Plant Pathol 10, 305-10. PubMed

63.- Roschzttardtz H, Fuentes I, Vasquez M, Corvalan C, Leon G, Gomez I, Araya A, Holuigue L, Vicente-Carbajosa J, Jordana X (2009). A nuclear gene encoding the iron-sulfur subunit of mitochondrial complex II is regulated by B3 domain transcription factors during seed development in Arabidopsis. Plant Physiol 150, 84-95. PubMed

64.- Perez-Pantoja D, Donoso RA, Sanchez MA, Gonzalez B (2009). Genuine genetic redundancy in maleylacetate-reductase-encoding genes involved in degradation of haloaromatic compounds by Cupriavidus necator JMP134. Microbiology 155, 3641-51. PubMed

65.- Ledger T, Aceituno F, Gonzalez B (2009). 3-Chlorobenzoate is taken up by a chromosomally encoded transport system in Cupriavidus necator JMP134. Microbiology 155, 2757-65. PubMed

66.- Gifford ML, Dean A, Gutierrez RA, Coruzzi GM, Birnbaum KD (2008). Cell-specific nitrogen responses mediate developmental plasticity. Proc Natl Acad Sci U S A 105, 803-8. PubMed

67.- Gutierrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM (2008). Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1. Proc Natl Acad Sci U S A 105, 4939-44. PubMed

68.- Thum KE, Shin MJ, Gutierrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM (2008). An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis. BMC Syst Biol 2, 31. PubMed

69.- Vidal EA, Gutierrez RA (2008). A systems view of nitrogen nutrient and metabolite responses in Arabidopsis. Curr Opin Plant Biol 11, 521-9. PubMed

70.- Aceituno FF, Moseyko N, Rhee SY, Gutierrez RA (2008). The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana. BMC Genomics 9, 438. PubMed

71.- Bender J, Benfey P, Bergmann D, Borevitz J, Coruzzi G, Dangl J, Dean C, Ecker J, Estelle M, Glazebrook J, Grant S, Guerinot ML, Gutierrez R, Long J, Nordborg M, Poethig S, Raikhel N, Schmitt J, Schnittger A, Vidal M (2008). 2020 vision for biology: the role of plants in addressing grand challenges in biology. Mol Plant 1, 561-3. PubMed

72.- Matus JT, Aquea F, Arce-Johnson P (2008). Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes. BMC Plant Biol 8, 83. PubMed

73.- Serrano C, Gonzalez-Cruz J, Jauregui F, Medina C, Mancilla P, Matus JT, Arce-Johnson P (2008). Genetic and histological studies on the delayed systemic movement of Tobacco Mosaic Virus in Arabidopsis thaliana. BMC Genet 9, 59. PubMed

74.- Aquea F, Poupin MJ, Matus JT, Gebauer M, Medina C, Arce-Johnson P (2008). Synthetic seed production from somatic embryos of Pinus radiata. Biotechnol Lett 30, 1847-52. PubMed

75.- Aquea F, Arce-Johnson P (2008). Identification of genes expressed during early somatic embryogenesis in Pinus radiata. Plant Physiol Biochem 46, 559-68. PubMed

76.- Ehrenfeld N, Gonzalez A, Canon P, Medina C, Perez-Acle T, Arce-Johnson P (2008). Structure-function relationship between the tobamovirus TMV-Cg coat protein and the HR-like response. J Gen Virol 89, 809-17. PubMed

77.- Stange C, Matus JT, Dominguez C, Perez-Acle T, Arce-Johnson P (2008). The N-homologue LRR domain adopts a folding which explains the TMV-Cg-induced HR-like response in sensitive tobacco plants. J Mol Graph Model 26, 850-60. PubMed

78.- Aquea F, Gutierrez F, Medina C, Arce-Johnson P (2008). A novel Otubain-like cysteine protease gene is preferentially expressed during somatic embryogenesis in Pinus radiata. Mol Biol Rep 35, 567-73. PubMed

79.- Holuigue L, Vielle-Calzada JP, Gutierrez RA (2008). Crops in all shapes and sizes. Genome Biol 9, 319. PubMed

80.- Perez-Pantoja D, De la Iglesia R, Pieper DH, Gonzalez B (2008). Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134. FEMS Microbiol Rev 32, 736-94. PubMed

81.- Moran AC, Hengst MB, De La Iglesia R, Andrade S, Correa JA, Gonzalez B (2008). Changes in bacterial community structure associated with coastal copper enrichment. Environ Toxicol Chem 27, 2239-45. PubMed

82.- Poultney CS, Gutierrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE (2007). Sungear: interactive visualization and functional analysis of genomic datasets. Bioinformatics 23, 259-61. PubMed

83.- Gutierrez RA, Lejay LV, Dean A, Chiaromonte F, Shasha DE, Coruzzi GM (2007). Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. Genome Biol 8, R7. PubMed

84.- Gutierrez RA, Gifford ML, Poultney C, Wang R, Shasha DE, Coruzzi GM, Crawford NM (2007). Insights into the genomic nitrate response using genetics and the Sungear Software System. J Exp Bot 58, 2359-67. PubMed

85.- Espinoza C, Medina C, Somerville S, Arce-Johnson P (2007). Senescence-associated genes induced during compatible viral interactions with grapevine and Arabidopsis. J Exp Bot 58, 3197-212. PubMed

86.- Poupin MJ, Federici F, Medina C, Matus JT, Timmermann T, Arce-Johnson P (2007). Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APETALA3 genes which are differentially expressed during flower and fruit development. Gene 404, 10-24. PubMed

87.- Espinoza C, Vega A, Medina C, Schlauch K, Cramer G, Arce-Johnson P (2007). Gene expression associated with compatible viral diseases in grapevine cultivars. Funct Integr Genomics 7, 95-110. PubMed

88.- Leon G, Holuigue L, Jordana X (2007). Mitochondrial complex II Is essential for gametophyte development in Arabidopsis. Plant Physiol 143, 1534-46. PubMed

89.- Sanchez MA, Gonzalez B (2007). Genetic characterization of 2,4,6-trichlorophenol degradation in Cupriavidus necator JMP134. Appl Environ Microbiol 73, 2769-76. PubMed

90.- Manzano M, Moran AC, Tesser B, Gonzalez B (2007). Role of eukaryotic microbiota in soil survival and catabolic performance of the 2,4-D herbicide degrading bacteria Cupriavidus necator JMP134. Antonie Van Leeuwenhoek 91, 115-26. PubMed

91.- Salinas P, Fuentes D, Vidal E, Jordana X, Echeverria M, Holuigue L (2006). An extensive survey of CK2 alpha and beta subunits in Arabidopsis: multiple isoforms exhibit differential subcellular localization. Plant Cell Physiol 47, 1295-308. PubMed

92.- Elorza A, Roschzttardtz H, Gomez I, Mouras A, Holuigue L, Araya A, Jordana X (2006). A nuclear gene for the iron-sulfur subunit of mitochondrial complex II is specifically expressed during Arabidopsis seed development and germination. Plant Cell Physiol 47, 14-21. PubMed

93.- Larrain-Linton J, De la Iglesia R, Melo F, Gonzalez B (2006). Molecular and population analyses of a recombination event in the catabolic plasmid pJP4. J Bacteriol 188, 6793-801. PubMed

94.- Moran AC, Muller A, Manzano M, Gonzalez B (2006). Simazine treatment history determines a significant herbicide degradation potential in soils that is not improved by bioaugmentation with Pseudomonas sp. ADP. J Appl Microbiol 101, 26-35. PubMed

95.- Ledger T, Pieper DH, Gonzalez B (2006). Chlorophenol hydroxylases encoded by plasmid pJP4 differentially contribute to chlorophenoxyacetic acid degradation. Appl Environ Microbiol 72, 2783-92. PubMed

96.- De la Iglesia R, Castro D, Ginocchio R, van der Lelie D, Gonzalez B (2006). Factors influencing the composition of bacterial communities found at abandoned copper-tailings dumps. J Appl Microbiol 100, 537-44. PubMed

97.- Gutierrez RA, Shasha DE, Coruzzi GM (2005). Systems biology for the virtual plant. Plant Physiol 138, 550-4. PubMed

98.- Lidder P, Gutierrez RA, Salome PA, McClung CR, Green PJ, Li C, Potuschak T, Colon-Carmona A, Gutierrez RA, Doerner P (2005). Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway.Arabidopsis TCP20 links regulation of growth and cell division control pathways. Plant PhysiolProc Natl Acad Sci U S A 138102, 2374-8512978-83. PubMed

99.- Blanco F, Garreton V, Frey N, Dominguez C, Perez-Acle T, Van der Straeten D, Jordana X, Holuigue L (2005). Identification of NPR1-dependent and independent genes early induced by salicylic acid treatment in Arabidopsis. Plant Mol Biol 59, 927-44. PubMed

100.- Choury D, Farre JC, Jordana X, Araya A (2005). Gene expression studies in isolated mitochondria: Solanum tuberosum rps10 is recognized by cognate potato but not by the transcription, splicing and editing machinery of wheat mitochondria. Nucleic Acids Res 33, 7058-65. PubMed

101.- Gutierrez RA, Green PJ, Keegstra K, Ohlrogge JB (2004). Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms? Genome Biol 5, R53. PubMed

102.- Gutierrez RA, Larson MD, Wilkerson C (2004). The plant-specific database. Classification of Arabidopsis proteins based on their phylogenetic profile. Plant Physiol 135, 1888-92. PubMed

103.- Wang R, Tischner R, Gutierrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM (2004). Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol 136, 2512-22. PubMed

104.- Uquillas C, Letelier I, Blanco F, Jordana X, Holuigue L (2004). NPR1-independent activation of immediate early salicylic acid-responsive genes in Arabidopsis. Mol Plant Microbe Interact 17, 34-42. PubMed

105.- Sandoval P, Leon G, Gomez I, Carmona R, Figueroa P, Holuigue L, Araya A, Jordana X (2004). Transfer of RPS14 and RPL5 from the mitochondrion to the nucleus in grasses. Gene 324, 139-47. PubMed

106.- Choury D, Farre JC, Jordana X, Araya A (2004). Different patterns in the recognition of editing sites in plant mitochondria. Nucleic Acids Res 32, 6397-406. PubMed

107.- Elorza A, Leon G, Gomez I, Mouras A, Holuigue L, Araya A, Jordana X (2004). Nuclear SDH2-1 and SDH2-2 genes, encoding the iron-sulfur subunit of mitochondrial complex II in Arabidopsis, have distinct cell-specific expression patterns and promoter activities. Plant Physiol 136, 4072-87. PubMed

108.- Sanchez MA, Vasquez M, Gonzalez B (2004). A previously unexposed forest soil microbial community degrades high levels of the pollutant 2,4,6-trichlorophenol. Appl Environ Microbiol 70, 7567-70. PubMed

109.- Trefault N, De la Iglesia R, Molina AM, Manzano M, Ledger T, Perez-Pantoja D, Sanchez MA, Stuardo M, Gonzalez B (2004). Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways. Environ Microbiol 6, 655-68. PubMed

110.- Stuardo M, Vasquez M, Vicuna R, Gonzalez B (2004). Molecular approach for analysis of model fungal genes encoding ligninolytic peroxidases in wood-decaying soil systems. Lett Appl Microbiol 38, 43-9. PubMed

111.- Matus V, Sanchez MA, Martinez M, Gonzalez B (2003). Efficient degradation of 2,4,6-Trichlorophenol requires a set of catabolic genes related to tcp genes from Ralstonia eutropha JMP134(pJP4). Appl Environ Microbiol 69, 7108-15. PubMed

112.- Perez-Pantoja D, Ledger T, Pieper DH, Gonzalez B (2003). Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid. J Bacteriol 185, 1534-42. PubMed

113.- Gutierrez RA, Ewing RM, Cherry JM, Green PJ (2002). Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes. Proc Natl Acad Sci U S A 99, 11513-8. PubMed

114.- Figueroa P, Leon G, Elorza A, Holuigue L, Araya A, Jordana X (2002). The four subunits of mitochondrial respiratory complex II are encoded by multiple nuclear genes and targeted to mitochondria in Arabidopsis thaliana. Plant Mol Biol 50, 725-34. PubMed

115.- Garreton V, Carpinelli J, Jordana X, Holuigue L (2002). The as-1 promoter element is an oxidative stress-responsive element and salicylic acid activates it via oxidative species. Plant Physiol 130, 1516-26. PubMed

116.- Trefault N, Clement P, Manzano M, Pieper DH, Gonzalez B (2002). The copy number of the catabolic plasmid pJP4 affects growth of Ralstonia eutropha JMP134 (pJP4) on 3-chlorobenzoate. FEMS Microbiol Lett 212, 95-100. PubMed

117.- Jordan M, Sanchez MA, Padilla L, Cespedes R, Osses M, Gonzalez B (2002). Kraft mill residues effects on Monterey pine growth and soil microbial activity. J Environ Qual 31, 1004-9. PubMed

118.- Ghosh D, Sawicki M, Lala P, Erman M, Pangborn W, Eyzaguirre J, Gutierrez R, Jornvall H, Thiel DJ (2001). Multiple conformations of catalytic serine and histidine in acetylxylan esterase at 0.90 A. J Biol Chem 276, 11159-66. PubMed

119.- Salinas P, Bantignies B, Tapia J, Jordana X, Holuigue L (2001). Cloning and characterization of the cDNA coding for the catalytic alpha subunit of CK2 from tobacco. Mol Cell Biochem 227, 129-35. PubMed

120.- Farre JC, Leon G, Jordana X, Araya A (2001). cis Recognition elements in plant mitochondrion RNA editing. Mol Cell Biol 21, 6731-7. PubMed

121.- Figueroa P, Leon G, Elorza A, Holuigue L, Jordana X (2001). Three different genes encode the iron-sulfur subunit of succinate dehydrogenase in Arabidopsis thaliana. Plant Mol Biol 46, 241-50. PubMed

122.- Hidalgo P, Garreton V, Berrios CG, Ojeda H, Jordana X, Holuigue L (2001). A nuclear casein kinase 2 activity is involved in early events of transcriptional activation induced by salicylic acid in tobacco. Plant Physiol 125, 396-405. PubMed

123.- Clement P, Pieper DH, Gonzalez B (2001). Molecular characterization of a deletion/duplication rearrangement in tfd genes from Ralstonia eutropha JMP134(pJP4) that improves growth on 3-chlorobenzoic acid but abolishes growth on 2,4-dichlorophenoxyacetic acid. Microbiology 147, 2141-8. PubMed

124.- Figueroa P, Holuigue L, Araya A, Jordana X (2000). The nuclear-encoded SDH2-RPS14 precursor is proteolytically processed between SDH2 and RPS14 to generate maize mitochondrial RPS14. Biochem Biophys Res Commun 271, 380-5. PubMed

125.- Kubo N, Jordana X, Ozawa K, Zanlungo S, Harada K, Sasaki T, Kadowaki K (2000). Transfer of the mitochondrial rps10 gene to the nucleus in rice: acquisition of the 5' untranslated region followed by gene duplication. Mol Gen Genet 263, 733-9. PubMed

126.- Padilla L, Matus V, Zenteno P, Gonzalez B (2000). Degradation of 2,4,6-trichlorophenol via chlorohydroxyquinol in Ralstonia eutropha JMP134 and JMP222. J Basic Microbiol 40, 243-9. PubMed

127.- Perez-Pantoja D, Guzman L, Manzano M, Pieper DH, Gonzalez B (2000). Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4). Appl Environ Microbiol 66, 1602-8. PubMed

128.- Ghosh D, Erman M, Sawicki M, Lala P, Weeks DR, Li N, Pangborn W, Thiel DJ, Jornvall H, Gutierrez R, Eyzaguirre J (1999). Determination of a protein structure by iodination: the structure of iodinated acetylxylan esterase. Acta Crystallogr D Biol Crystallogr 55, 779-84. PubMed

129.- Gutierrez RA, MacIntosh GC, Green PJ (1999). Current perspectives on mRNA stability in plants: multiple levels and mechanisms of control. Trends Plant Sci 4, 429-438. PubMed

130.- Figueroa P, Gomez I, Holuigue L, Araya A, Jordana X (1999). Transfer of rps14 from the mitochondrion to the nucleus in maize implied integration within a gene encoding the iron-sulphur subunit of succinate dehydrogenase and expression by alternative splicing. Plant J 18, 601-9. PubMed

131.- Chrispeels MJ, Holuigue L, Latorre R, Luan S, Orellana A, Pena-Cortes H, Raikhel NV, Ronald PC, Trewavas A (1999). Signal transduction networks and the biology of plant cells. Biol Res 32, 35-60. PubMed

132.- Figueroa P, Gomez I, Carmona R, Holuigue L, Araya A, Jordana X (1999). The gene for mitochondrial ribosomal protein S14 has been transferred to the nucleus in Arabidopsis thaliana. Mol Gen Genet 262, 139-44. PubMed

133.- Godoy F, Zenteno P, Cerda F, Gonzalez B, Martinez M (1999). Tolerance to trichlorophenols in microorganisms from a polluted and a pristine site of a river Chemosphere 38, 655-62. PubMed

134.- Gutierrez R, Cederlund E, Hjelmqvist L, Peirano A, Herrera F, Ghosh D, Duax W, Jornvall H, Eyzaguirre J (1998). Acetyl xylan esterase II from Penicillium purpurogenum is similar to an esterase from Trichoderma reesei but lacks a cellulose binding domain. FEBS Lett 423, 35-8. PubMed

135.- Begu D, Mercado A, Farre JC, Moenne A, Holuigue L, Araya A, Jordana X (1998). Editing status of mat-r transcripts in mitochondria from two plant species: C-to-U changes occur in putative functional RT and maturase domains. Curr Genet 33, 420-8. PubMed

136.- Stange C, Ramirez I, Gomez I, Jordana X, Holuigue L (1997). Phosphorylation of nuclear proteins directs binding to salicylic acid-responsive elements. Plant J 11, 1315-24. PubMed

137.- Valenzuela J, Bumann U, Cespedes R, Padilla L, Gonzalez B (1997). Degradation of Chlorophenols by Alcaligenes eutrophus JMP134(pJP4) in Bleached Kraft Mill Effluent. Appl Environ Microbiol 63, 227-32. PubMed

138.- Egana L, Gutierrez R, Caputo V, Peirano A, Steiner J, Eyzaguirre J (1996). Purification and characterization of two acetyl xylan esterases from Penicillium purpurogenum. Biotechnol Appl Biochem 24 ( Pt 1), 33-9. PubMed

139.- Pangborn W, Erman M, Li N, Burkhart BM, Pletnev VZ, Duax WL, Gutierrez R, Peirano A, Eyzaguirre J, Thiel DJ, Ghosh D (1996). Characterization of crystals of Penicillium purpurogenum acetyl xylan esterase from high-resolution x-ray diffraction. Proteins 24, 523-4. PubMed

140.- Quinones V, Zanlungo S, Moenne A, Gomez I, Holuigue L, Litvak S, Jordana X (1996). The rpl5-rps14-cob gene arrangement in Solanum tuberosum: rps14 is a transcribed and unedited pseudogene. Plant Mol Biol 31, 937-43. PubMed

141.- Zanlungo S, Quinones V, Moenne A, Holuigue L, Jordana X (1995). Splicing and editing of rps10 transcripts in potato mitochondria. Curr Genet 27, 565-71. PubMed

142.- Quinones V, Zanlungo S, Holuigue L, Litvak S, Jordana X (1995). The cox1 initiation codon is created by RNA editing in potato mitochondria. Plant Physiol 108, 1327-8. PubMed

143.- Qin XF, Holuigue L, Horvath DM, Chua NH (1994). Immediate early transcription activation by salicylic acid via the cauliflower mosaic virus as-1 element. Plant Cell 6, 863-74. PubMed

144.- Zanlungo S, Quinones V, Moenne A, Holuigue L, Jordana X (1994). A ribosomal protein S10 gene is found in the mitochondrial genome in Solanum tuberosum. Plant Mol Biol 25, 743-9. PubMed

145.- Lizama L, Holuigue L, Jordana X (1994). Transcription initiation sites for the potato mitochondrial gene coding for subunit 9 of ATP synthase (atp9). FEBS Lett 349, 243-8. PubMed

146.- Orellana A, Holuigue L, Hidalgo PC, Faundez V, Gonzalez A, Bronfman M (1993). Ciprofibrate, a carcinogenic peroxisome proliferator, increases the phosphorylation of epidermal-growth-factor receptor in isolated rat hepatocytes. Eur J Biochem 215, 903-6. PubMed

147.- Gonzalez B, Acevedo C, Brezny R, Joyce T (1993). Metabolism of chlorinated guaiacols by a guaiacol-degrading Acinetobacter junii strain. Appl Environ Microbiol 59, 3424-9. PubMed

148.- Faundez V, Krauss R, Holuigue L, Garrido J, Gonzalez A (1992). Epidermal growth factor receptor in synaptic fractions of the rat central nervous system. J Biol Chem 267, 20363-70. PubMed

149.- Gonzalez B, Vicuna R (1989). Benzaldehyde lyase, a novel thiamine PPi-requiring enzyme, from Pseudomonas fluorescens biovar I. J Bacteriol 171, 2401-5. PubMed

150.- Jordana X, Chatton B, Paz-Weisshaar M, Buhler JM, Cramer F, Ebel JP, Fasiolo F (1987). Structure of the yeast valyl-tRNA synthetase gene (VASI) and the homology of its translated amino acid sequence with Escherichia coli isoleucyl-tRNA synthetase. J Biol Chem 262, 7189-94. PubMed

151.- Gonzalez B, Merino A, Almeida M, Vicna R (1986). Comparative growth of natural bacterial isolates on various lignin-related compounds. Appl Environ Microbiol 52, 1428-32. PubMed

152.- Vallejos RH, Holuigue L, Lucero HA, Torruella M (1985). Evidence of tyrosine kinase activity in the photosynthetic bacterium Rhodospirillum rubrum. Biochem Biophys Res Commun 126, 685-91. PubMed

153.- Jordana X, Olate J, Allende CC, Allende JE (1984). Studies on the mechanism of inhibition of amphibian oocyte adenylate cyclase by progesterone. Arch Biochem Biophys 228, 379-87. PubMed